There’s something magical about pulling a fresh batch of chocolate crinkle cookies from the oven – that perfect contrast between the powdery white exterior and rich, fudgy interior. But what if I told you that you could enjoy these classic holiday favorites while staying true to your paleo, gluten-free, and vegan lifestyle? These Paleo Chocolate Crinkle Cookies bring all the nostalgic flavor without any of the ingredients you’re avoiding.
Why You’ll Love These Paleo Chocolate Crinkle Cookies
- Dietary-Friendly: Perfect for paleo, gluten-free, and vegan diets without sacrificing taste
- Rich Chocolate Flavor: Deep cocoa flavor that satisfies any chocolate craving
- Beautiful Appearance: Classic crackled top makes them as pretty as they are delicious
- Simple Ingredients: Made with wholesome, recognizable ingredients
- Holiday Perfect: Ideal for Christmas cookie exchanges and holiday gatherings
- Kid Approved: Even picky eaters won’t know they’re “healthy”
The best part? These cookies don’t just look like their traditional counterparts – they deliver the same fudgy, rich experience that makes chocolate crinkle cookies a beloved classic.
Ingredients You’ll Need
For the Cookies:
- 1½ cups almond flour
- ⅓ cup coconut flour
- ½ cup unsweetened cocoa powder
- 1 teaspoon baking soda
- ¼ teaspoon sea salt
- ⅓ cup coconut oil, melted
- ⅔ cup coconut sugar
- ¼ cup pure maple syrup
- 2 flax eggs (2 tablespoons ground flaxseed + 5 tablespoons water)
- 1 teaspoon vanilla extract
For Rolling:
- ⅓ cup powdered coconut sugar (blend coconut sugar in a blender until fine)
Step-by-Step Instructions
Prepare the Flax Eggs
Step 1: Combine 2 tablespoons ground flaxseed with 5 tablespoons water in a small bowl.
Step 2: Stir well and let sit for 10-15 minutes until thickened to an egg-like consistency.
Make the Cookie Dough
Step 3: In a medium bowl, whisk together almond flour, coconut flour, cocoa powder, baking soda, and salt until well combined.
Step 4: In a large bowl, mix the melted coconut oil, coconut sugar, and maple syrup until smooth.
Step 5: Add the prepared flax eggs and vanilla extract to the wet ingredients, stirring until fully incorporated.
Step 6: Gradually add the dry ingredients to the wet mixture, folding gently until a thick dough forms.
Step 7: Cover the dough and refrigerate for at least 2 hours, or preferably overnight. This step is crucial for the right texture!
Shape and Bake
Step 8: Preheat your oven to 350°F (175°C) and line two baking sheets with parchment paper.
Step 9: Prepare your powdered coconut sugar in a small bowl.
Step 10: Remove the chilled dough from the refrigerator. Using a cookie scoop or tablespoon, roll the dough into 1-inch balls.
Step 11: Roll each ball in the powdered coconut sugar, making sure they’re generously coated on all sides.
Step 12: Place the coated dough balls on the prepared baking sheets, spacing them about 2 inches apart.
Step 13: Bake for 10-12 minutes. The cookies will look slightly underdone and soft in the center – this is perfect!
Step 14: Allow the cookies to cool on the baking sheet for 5 minutes before transferring to a wire rack to cool completely.

Pro Tips for Success
- Don’t Skip the Chilling: The refrigeration time is non-negotiable! This allows the flours to absorb moisture and prevents flat cookies.
- Perfect Powdered Coating: For the most aesthetic crinkle effect, roll the dough balls in powdered coconut sugar twice.
- Coconut Sugar Processing: When making your powdered coconut sugar, blend it in short pulses to prevent it from becoming too warm and clumping.
- Watch the Baking Time: These cookies are meant to be fudgy. Remove them from the oven when they still look slightly underdone – they’ll continue cooking on the hot baking sheet.
- Use Room Temperature Ingredients: Allow refrigerated items to come to room temperature before mixing for the smoothest dough.
Nutritional Information
- Calories: 125 per cookie
- Protein: 2g
- Carbohydrates: 12g
- Fat: 8g
- Fiber: 2g
- Sugar: 8g
These cookies are significantly lower in refined sugar and higher in protein and fiber than traditional chocolate crinkle cookies, making them a smarter indulgence.
Storage and Leftovers
These Paleo Chocolate Crinkle Cookies maintain their texture and flavor beautifully when stored properly:
Room Temperature: Store in an airtight container for up to 5 days. Place parchment paper between layers to maintain the powdered sugar coating.
Refrigerator: Keep in a sealed container for up to 10 days. Allow cookies to come to room temperature before serving for the best texture.
Freezer: These cookies freeze exceptionally well! Place completely cooled cookies in a single layer on a baking sheet and freeze until solid. Transfer to a freezer-safe container or bag and store for up to 3 months. Thaw at room temperature.
Make-Ahead Dough: You can prepare the dough up to 3 days in advance and keep it refrigerated until ready to bake. You can also freeze the dough balls (before rolling in sugar) for up to 3 months.
Serving Suggestions
These Paleo Chocolate Crinkle Cookies are versatile enough to star in many different settings:
- Pair with a glass of almond milk for an afternoon treat
- Serve alongside fresh berries for a simple dessert
- Include on your holiday cookie platter
- Package in a decorative tin for homemade gifts
- Crumble over paleo ice cream for a decadent dessert
For an extra special treat, warm a cookie for 10 seconds in the microwave before serving for a melty, fresh-from-the-oven experience.
Top 4 FAQs About Paleo Chocolate Crinkle Cookies
Can I substitute the almond flour if I have a nut allergy?
Yes! Sunflower seed flour works as a 1:1 replacement for almond flour in this recipe. Be aware that sunflower seed flour can sometimes react with baking soda to create a green tint – it’s harmless but something to expect.
Why didn’t my cookies crinkle as much as expected?
The classic crinkle effect depends on a few factors: make sure your dough is thoroughly chilled, your oven is fully preheated, and you’ve generously coated the dough balls in powdered sugar. The contrast between the cold dough hitting the hot oven creates those beautiful cracks.
Can I use regular eggs instead of flax eggs?
Absolutely! If you follow a paleo diet that includes eggs, you can substitute 2 regular eggs for the flax eggs. The cookies will have a slightly different texture but will still be delicious.
How can I make these cookies extra fudgy?
For an even fudgier cookie, you can add 2-3 tablespoons of melted paleo-friendly chocolate to the wet ingredients. You can also reduce the baking time by 1-2 minutes for a softer center.
Variations to Try
Mint Chocolate: Add ¼ teaspoon peppermint extract to the wet ingredients for a holiday-perfect variation.
Orange Chocolate: Mix in 1 tablespoon of orange zest for a bright, citrusy twist that complements the chocolate beautifully.
Mocha Crinkles: Add 1 tablespoon of instant espresso powder to the dry ingredients for coffee lovers.
Mexican Chocolate: Spice things up with ½ teaspoon cinnamon and a pinch of cayenne pepper in the dry ingredients.
Double Chocolate: Fold in ¼ cup of paleo-friendly chocolate chips for extra chocolate intensity.
Conclusion
These Paleo Chocolate Crinkle Cookies – Gluten-Free & Vegan prove that dietary restrictions don’t have to mean missing out on classic treats. With their fudgy centers, crackled tops, and rich chocolate flavor, they’re bound to become a new favorite in your recipe collection.
Whether you’re baking for the holidays, preparing a special treat, or simply craving something sweet that aligns with your dietary choices, these cookies deliver in both taste and appearance. The fact that they’re made with wholesome ingredients is just the powdered sugar on top!
Have you tried making these Paleo Chocolate Crinkle Cookies? Drop a comment below to share your experience or any creative variations you’ve tried! Don’t forget to save this recipe for your next baking session – your future self will thank you.
Print
Paleo Chocolate Crinkle Cookies – Gluten-Free & Vegan
- Total Time: 152 minutes
- Yield: 24 cookies 1x
- Diet: Vegan
Description
These Paleo Chocolate Crinkle Cookies are a decadent, healthier twist on the classic holiday favorite. With a crisp, powdered exterior and a fudgy, chocolatey center, they’re entirely grain-free, gluten-free, vegan, and refined sugar-free—perfect for any clean-eating lifestyle.
Ingredients
- 1½ cups almond flour
- ⅓ cup coconut flour
- ½ cup unsweetened cocoa powder
- 1 teaspoon baking soda
- ¼ teaspoon sea salt
- ⅓ cup coconut oil, melted
- ⅔ cup coconut sugar
- ¼ cup pure maple syrup
- 2 flax eggs (2 tablespoons ground flaxseed + 5 tablespoons water)
- 1 teaspoon vanilla extract
- ⅓ cup powdered coconut sugar (for rolling)
Instructions
- In a small bowl, combine the ground flaxseed and water. Stir and let sit for 10–15 minutes until it thickens into a gel-like consistency.
- In a medium mixing bowl, whisk together the almond flour, coconut flour, cocoa powder, baking soda, and salt.
- In a large bowl, mix the melted coconut oil, coconut sugar, and maple syrup until smooth.
- Stir in the prepared flax eggs and vanilla extract until fully incorporated.
- Gradually add the dry mixture to the wet, folding gently until a soft, sticky dough forms.
- Cover the bowl and chill the dough in the refrigerator for at least 2 hours or overnight.
- Preheat the oven to 350°F (175°C) and line two baking sheets with parchment paper.
- Place the powdered coconut sugar into a small bowl.
- Using a tablespoon or cookie scoop, form the chilled dough into 1-inch balls.
- Roll each dough ball generously in the powdered coconut sugar, coating all sides.
- Arrange the dough balls on the prepared baking sheets, spaced 2 inches apart.
- Bake for 10–12 minutes. The cookies will appear soft in the center but will firm up as they cool.
- Cool on the baking sheet for 5 minutes, then transfer to a wire rack to cool completely.
Notes
- Chilling the dough is essential to achieving the correct texture and preventing spreading.
- For a more pronounced crinkle effect, roll each dough ball in powdered coconut sugar twice.
- Don’t overbake—the centers should remain soft for that perfect fudgy bite.
- Store in an airtight container at room temperature for up to 5 days, or refrigerate for up to 10. Freeze for up to 3 months.
- Prep Time: 20 minutes
- Cook Time: undefined
- Category: Dessert
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 cookie
- Calories: 125
- Sugar: 8
- Sodium: N/A
- Fat: 8
- Saturated Fat: N/A
- Unsaturated Fat: N/A
- Trans Fat: N/A
- Carbohydrates: 12
- Fiber: 2
- Protein: 2
- Cholesterol: N/A
Keywords: paleo chocolate crinkle cookies, gluten-free cookies, vegan chocolate cookies, paleo dessert, holiday cookies, healthy chocolate crinkles